Package content | Package metadata | DESCRIPTION | README | Recommended workflow | Resources

Prerequisites | GIT configuration | Creating a GitHub repo | Managing credentials | Usage | Resources | Contributing | Colophon

Compendium content | Compendium metadata | DESCRIPTION | README | Recommendations | Advanced features | Using renv | Using docker

Count formats | Conversion functions | compute_abundances() | compute_concentrations() | compute_frequencies()

Setup | Spatial visualization | Creating a world map | Mapping FORCIS data | Temporal visualization | Plot data by year of sampling | Plot data by month of sampling | Plot data by season | Vertical visualization | Plot data by depth of sampling

Installation | Download FORCIS database | Import FORCIS data | Select a FORCIS taxonomy | Use case 1: Exploration | Use case 2: Specific question | Find the species name | Species filter | Temporal filter | Spatial filter | Distribution map | To go further | References

Setup | Selecting columns | Select a taxonomy | Select required columns | Filtering rows | Filter by month of data collection | Filter by year of data collection | Filter by bounding box | Filter by ocean | Filter by spatial polygon | Filter by species | Reshaping | Convert to long format

Site identifier | Profile identifier | Cast identifier | Sample identifier | Subsample identifier

Using the latest version | Using a specific version

Network properties | Neighbors detection | Workflow | Node labels | Edge list | Connectivity matrix | Extending chessboard | with sf | with ggplot2 | with igraph | Plot the network w/ igraph ----

Pawn | Fool | Rook | Bishop | Knight | Queen | Wizard | Custom moves | References

Visualizing chessboard | gg_chessboard | geom_node | geom_neighbors | geom_edges | Plotting matrices | Mapping edges

Statistical method | Field method | Count conversion | Relative rate of increase | Checking data | Formatting data | Fitting trend | References

Setup | Datasets | Compute distances

Calculating rmax | Building conversion table | Categorizing species | References

Overview | Managing WDPA API Token | Getting Countries Information | Downloading Protected Areas